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machine learning classifier  (Indica Labs)

 
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    Indica Labs machine learning classifier
    Machine Learning Classifier, supplied by Indica Labs, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/machine-learning+classifier/algorithm+deep+learning/pmc12484868-337-1-8
    Average 86 stars, based on 1 article reviews
    machine learning classifier - by Bioz Stars, 2026-11
    86/100 stars

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    Related Articles

    other:

    Article Title: Temporal changes in mammographic breast density and breast cancer risk among women with benign breast disease
    Article Snippet: Additionally, as previously described [ ], quantitative data on the amount of epithelium, stroma, and adipose tissue on the breast biopsy were obtained by using supervised machine learning algorithms (Halo 1.2 Tissue Classifier algorithm, Indica Labs, Albuquerque, New Mexico).

    Article Title: Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.
    Article Snippet: Phosphosites related to ischemia Mertins et al.91, N/A MSigDB’s database (v 7.5.1) Liberzon et al.93 http://software.broadinstitute.org/gsea/ msigdb/index.jsp DDR pathway database Huang et al.17 http://ptrc-ddr.cptac-data-view.org Software and algorithms Github repository for code used for data analysis and figures for this paper This paper https://github.com/WangLab-MSSM/ CPTAC_Ovarian_Chemo_Response HALO Tissue Classifier machine learning algorithm Indica Labs https://indicalab.com/halo-ai/ Philosopher v3.2.8 Alexey Nesvizhskii Lab; da Veiga Leprevost et al.94 https://philosopher.nesvilab.org/ MSFragger v3.0 Alexey Nesvizhskii Lab; Kong et al.95 https://msfragger.nesvilab.org/ PeptideProphet Keller et al.96 http://peptideprophet.sourceforge.net/ PTMProphet Shteynberg et al.97 http://www.tppms.org/tools/ptm/ TMT-Integrator Djomehri et al.98 http://github.com/huiyinc/TMT-Integrator MaxQuant/Andromeda Tyanova et al.99 http://maxquant.org ComBat (v3.20.0) Johnson et al.100 https://bioconductor.org/packages/ release/bioc/html/sva.html DreamAI Pei Wang Lab https://github.com/WangLab-MSSM/ DreamAI XDec Genboree https://github.com/BRL-BCM/XDec TPO workflow Michigan Center for Translational Pathology https://github.com/mctp/tpo Bbduk and bbduk2 BBMap https://github.com/BioInfoTools/BBMap/ tree/master/sh BWA-mem Li and Durbin101 https://github.com/lh3/bwa Seurat Stuart et al.102 https://github.com/satijalab/seurat/ releases/tag/v3.0.0 BayesDebulk Petralia et al.58 https://www.biorxiv.org/content/10.1101/ 2021.06.25.449763v2 DAGBagM Chowdhury et al.103 https://www.biorxiv.org/content/10.1101/ 2020.10.26.349076v1 GISTIC2.0 Mermel et al.89 https://github.com/broadinstitute/gistic2/ iProFun Song et al.27 https://github.com/WangLab-MSSM/ iProFun ESTIMATE Yoshihara et al.104 https://bioinformatics.mdanderson.org/ public-software/estimate/ Joint Random Forest Petralia et al.105 https://rdrr.io/cran/JRF/man/JRF.html TSNet Petralia et al.106 https://github.com/ WangLab-MSSM/TSNet xCell Aran et al.90 http://xcell.ucsf.edu/ (Continued on next page) ll OPEN ACCESS Cell 186, 3476–3498.e1–e22, August 3, 2023 e3 Resource

    Tissue:

    Article Title: Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer
    Article Snippet: Github repository for code used for data analysis and figures for this paper , This paper , https://github.com/WangLab-MSSM/CPTAC_Ovarian_Chemo_Response. .. HALO Tissue Classifier machine learning algorithm , Indica Labs , https://indicalab.com/halo-ai/. ..



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